BODIPY 650-X, SE具有良好的摩尔消光系数和发射量子产率。其中的 NHS ester（N - 羟基琥珀酰亚胺酯）可以与蛋白质、肽和其他分子的胺基结合。该分子含有额外的氨基己酸连接剂。Ex/Em(nm)=646/660。
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%3dCC(C)%3dN3%5bB%2b3%5d(%5bF-%5d)(%5bF-%5d)%5bN-%5d12)CCCCCCCCCCC(%3dO)%5bO-%5d.%5bH%2b%5d)
%3dCC(C)%3dN3%5bB%2b3%5d(%5bF-%5d)(%5bF-%5d)%5bN-%5d12)CCCC(%3dO)OC(COC(%3dO)CCCCCCCCCCCCCCC)COP(%5bO-%5d)(%3dO)OCC%5bN%2b%5d(C)(C)C)
%3dCC(C)%3dN3%5bB%2b3%5d(%5bF-%5d)(%5bF-%5d)%5bN-%5d12)CC(%3dO)NCCOP(%5bO-%5d)(%3dO)OCC(COC(%3dO)CCCCCCCCCCCCCCC)OC(%3dO)CCCCCCCCCCCCCCC.N(CC)(CC)CC)
